To be a voice of dissent. Putting the rock in the sand is perfectly ok, probably even good. If you go with a sand bed chances are it will be about 4" deep. I have my rock about 1" deep in the sand. You will, as you know from reading Biogeek's posts, need to add some live sand and/or detritivore kits. I suggest both from several sources. These critters eat detritus, Therefore the detritus is beneficial to have on the bottom of the tank. Sand compaction isn't a problem. Ever walk on a wet sand beach? Unless you try very hard you won't leave a footprint. Due to the size of the grains(most should be 0.5mm or so) we use it to backfill ditches in construction many times because it is already compacted when it gets dumped in. There may be a small amount of displacement when placing the rock. I am not sure what srbayless means when he says compaction defeats the purpose of a sand bed. The purpose of mine is denitrification which takes place in anoxic(oxygen-less) areas of the bed. The rock on/in the sand possibly aids in this by keeping circulation, and therefore oxygen, down. Another purpose is to feed my corals and clams. The critters that live in the sand reproduce creating larvae which feed the other critters in my tank. Hope this helps.