i'm at the same stage of my design right now, trying to figure out exactly how to set up the sump. mine is a 50 gal, 48x12x18. i will be running both a calcium reactor and skimmer in it. basically the plan is as follows:
before the water enters the in chamber, it is split off into two lines, one for most of the flow, the other with only a trickle going through. the trickle is fed into the fuge, the larger flow into the first baffle. the fuge overflows at a fairly small rate also into the first baffle compartment. from there all the water goes through the baffles, into the reactor and skimmer compartment and then back up to the display tank. i've seen similar setups and they work very very well.
i'm not exactly sure how many baffles i will be using, i expect 5 not including the piece of glass that seperates the fuge from the baffle section. the glass for the baffles is on order, i'll likely post my design once i get it finalized.