Ok, I've explained this
many times, and will try to do so a bit more succinctly here.
Basically, you are culturing bacteria, two species to accomplish the ammonia oxidation 'cycle', or better known as the nitrogen cycle. (That's what is happening, bacteria are oxidizing ammonia.) This means, rather by default, that these 'nitrifiers', or nitrifying bacteria, are aerobic.
Some chemical notations for you to remember:
Ammonia (unionized) -
NH3
Ammonia (ionized) -
NH4 (less toxic)
Nitrite -
NO2-
Nitrate -
NO3-
First set of bacteria, once established, will oxidize ammonia into nitrite. You will see ammonia rise, for there are no bacteria to consume it, then a subsequent rise in
nitrite that indicates a rise in these bacteria (
Nitrosomonas) cultures. This is a good thing.
Subsequently, as nitrite rises, ammonia will drop, but you're not finished yet. The
nitrite is still toxic, and fortunately has another step to go through, being oxidized into
nitrate. This means that once the colonies of
Nitrobacter (the critter that oxidizes nitrite into nitrate) become established, nitrite will then drop with a subsequent rise in nitrate.
Once ammonia and nitrite are zero (usually along with a rise in nitrate) you can consider your tank cycled.
http://www.wetwebmedia.com/marine/setup ... ofiltr.htm